PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054328001
Common NameGSBRNA2T00054328001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 366aa    MW: 40743.1 Da    PI: 9.1099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054328001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-0891139254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +  +  rE+ RR+++N+ f eL  +l ++     +K++Ka+iL+ + + +k+L
  GSBRNA2T00054328001  91 KSQKAGREKLRREKLNEHFVELGNVLDPD----RPKNDKATILTDTLQLLKEL 139
                          5566779******************9997....79***********9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.7E-1289161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1289155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.72889139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-590143No hitNo description
PfamPF000107.6E-691139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-695145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSLQKKKKKI ERGASTNEQQ ESFFVEPCLC LHLNRICPLP SILPAGESVL SLPPIDRLQL  60
TSSSLGFRSP LAKLGASSIK FSEVMDVSAR KSQKAGREKL RREKLNEHFV ELGNVLDPDR  120
PKNDKATILT DTLQLLKELT SEVNKLKSEY TALTDESREL TQEKNDLREE KTSLKSDIEN  180
LNLQYQQRLR SMSPWGAAMD HTVMMAPPPS FPYPMPMAMP PGSIPMHHPP MPSYTYFGNQ  240
NPSMMPAPYM PYMPPNTVVE QQSVHIPQNT RSREPRAKVS RESRSDKAED SNDVATQLEL  300
KTPGSTSDKD TSQRPEKSKR CKRNSNNNNS VEESSHSSKC SSSPSVRDNT SSSSVAGGLK  360
PDDAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.273780.0seed| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054328001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648077.10.0PREDICTED: transcription factor bHLH121
RefseqXP_013648076.10.0PREDICTED: transcription factor bHLH121
RefseqXP_013615996.10.0PREDICTED: transcription factor bHLH121
RefseqXP_013615991.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT231e-165BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A078H7F90.0A0A078H7F9_BRANA; BnaC01g33010D protein
STRINGAT3G19860.21e-162(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-134bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]